San Francisco's Best Cookies [Updated 2025]

From the classic chocolate chip to inventive flavors that push the boundaries of tradition, I've savored them all.

After reviewing 12 exceptional bakeries and their mouthwatering creations, I can confidently say that San Francisco is a cookie lover's paradise.

Each stop on this delicious journey has introduced me to a unique story, delightful textures, and unforgettable flavors that reflect the city's vibrant culinary scene.

Join me as I share my favorites, so you too can indulge in the sweet, irresistible world of San Francisco's best cookies.

Jane The Bakery

Highlights
Diverse baked goods selection
Fantastic catering experience
Options for all dietary needs
Tasty coffee twist
Seamless event organization

Jane The Bakery is a delightful gem nestled in the heart of San Francisco, offering an impressive selection of cookies that beckon you with their inviting aroma. As I stepped inside, I was immediately captivated by the diverse baked goods selection; each item seemed to tell a story of its own. The cookies I sampled were nothing short of heavenly, with the perfect balance of crispiness and chewiness that made my taste buds dance.

What truly sets Jane apart is their commitment to inclusivity; they offer options for all dietary needs without skimping on flavor. Whether you're gluten-free or vegan, there's a cookie waiting for you to devour. Their unique coffee twist only enhances the experience, making it the perfect pairing for your afternoon treat.

Moreover, I was impressed by their seamless event organization. If you're planning a gathering, Jane’s catering will exceed your expectations with their delicious baked offerings. The overall atmosphere is warm and inviting, making it an ideal spot for a quick pick-me-up or a leisurely dessert break. If you find yourself wandering the streets of San Francisco, do yourself a favor and visit Jane The Bakery — your taste buds will thank you!

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Thorough Bread & Pastry

Highlights
Great outdoor seating
Cozy atmosphere
Affordable prices
Good raspberry almond croissant
Above average custard morning bun

Thorough Bread & Pastry has certainly cemented its place in my heart (and my stomach)! Nestled in a cozy corner, the ambiance invites you to unwind while you indulge in delightful baked goods. Although I was on a mission to taste their cookies, I couldn't resist the charm of their raspberry almond croissant—a buttery marvel that’s just too good to ignore.

Yet, let’s get back to the reason I was there: the cookies! The moment I took a bite of their classic chocolate chip cookie, I was transported to dessert nirvana. The exterior offered a satisfying crunch, giving way to a warm, gooey center that was rich with chocolate. Each morsel felt like a delightful hug on a plate.

And don’t overlook their oatmeal raisin cookie—it’s the unexpected star of the show! Soft, chewy, and studded with plump raisins, it's comfort food reimagined.

With affordable prices and a stellar selection, Thorough Bread & Pastry deserves a spot on your must-visit list. So grab a cookie or two, and take advantage of the lovely outdoor seating—because life is too short not to enjoy cookies in the sun!

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Craftsman and Wolves Valencia

Highlights
Excellent coffee
Cozy and relaxed atmosphere
Friendly and welcoming staff
Perfected baked goods
Notable pastries with eggs

At Craftsman and Wolves Valencia, the atmosphere is as inviting as the sweet aromas wafting through the air. As I stepped inside, I was greeted by friendly staff who perfectly embodied the café's warm spirit. The coffee here isn’t just good; it’s excellent—an enticing partner for any cookie adventure.

Now, let’s talk cookies. Their offerings are not only delectable but also display an artistic flair reminiscent of a culinary masterpiece. I couldn't resist indulging in the chocolate chip cookie, which was deliciously rich and perfectly chewy. Each bite melted in my mouth, leaving me yearning for more.

The cozy setting encourages you to linger with your cookie and coffee, making it an ideal spot for a laid-back afternoon. I appreciated the perfectly baked goods that came hot out of the oven, each one meticulously crafted.

Whether you're a local or just passing through, this place is a must-visit for any cookie lover. Craftsman and Wolves Valencia skillfully blends high-quality ingredients with a welcoming vibe, making your cookie experience truly special. Trust me, your taste buds will thank you!

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Fillmore Bakeshop

Highlights
Irresistible hazelnut cookie
Delicious white chocolate treat
Affordable pricing under $5
Weekend special croissant
Unique flavor combinations

Fillmore Bakeshop truly is a delightful gem nestled in the bustling streets of San Francisco. As I approached the quaint little shop, the heavenly aroma of freshly baked goods practically pulled me in. I couldn't resist trying their irresistible hazelnut cookie. Oh, what a treat it was! Each bite was a perfect blend of nutty richness and buttery goodness, instantly reminding me why I adore cookies.

The white chocolate treat was another standout, drizzled with just enough sweetness to tantalize my taste buds without overpowering them. At under $5, these heavenly confections are a steal, making it easy to indulge without breaking the bank.

What shaped my visit into an unforgettable experience was the weekend special croissant, which I'd argue deserves a cookie's place in your snack lineup. The flaky layers and unique flavor combinations showcase the creativity of the bakers.

If you're in search of cookies that offer both taste and charm, Fillmore Bakeshop is a must-stop destination. There’s a playful ambiance to the shop that complements the culinary delights, and I found myself jotting down notes while delighting in sweets. I can't wait to return for more blissful bites!

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Flour & Branch

Highlights
High-quality ingredients
Cozy and cute atmosphere
Delicious pastries
Great brunch options
Friendly, yet slow service

Flour & Branch: A Cookie Lover’s Paradise

As I stepped into Flour & Branch, the inviting aroma of freshly baked goodies enveloped me in a warm embrace. This delightful spot boasts a cozy atmosphere that encourages lingering with a book or a friend. But let’s get to the heart of the matter—the cookies! Each one is crafted with high-quality ingredients, a labor of love that truly pays off.

I couldn’t resist trying several flavors, and each bite was a testament to their pastry expertise. The cookies were perfectly balanced—crispy on the outside and delightfully chewy within. My taste buds danced with joy, especially at the rich, buttery flavor that lingered long after I savored the last bite.

Although the service was a bit on the slow side, the friendly staff made up for it with their passion for all things sweet. The brunch options are also worth mentioning, making it a perfect spot to indulge in both cookies and a delightful meal.

In the realm of San Francisco’s cookie scene, Flour & Branch shines like a beacon for anyone seeking the ultimate cookie experience. I left with a smile, and yes, a box of treats for later!

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Neighbor Bakehouse

At Neighbor Bakehouse, I uncovered a cookie treasure that whisked me away with each bite. Their Sea Salt Chocolate Chip cookie is a must-try—a perfect balance of chewy and crispy with a sprinkle of sea salt that elevates the classic flavor. Each mouthful bursts with rich chocolate, making it impossible to stop at just one! The ambiance is warm and inviting, making it the perfect spot for a sweet escape. In a city filled with dessert options, Neighbor Bakehouse stands out as a must-visit destination for any cookie aficionado. Get ready to indulge in cookie bliss!

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Schubert's Bakery

Nestled in the heart of San Francisco, Schubert's Bakery is a delightful gem that took my taste buds on an adventurous journey. Their chocolate chip cookies are the star of the show—chewy yet crisp, they boast a perfect balance of sweetness and rich chocolate. Each bite feels like a warm hug! I also indulged in their oatmeal raisin option, which offered a comforting, nostalgic taste that’s hard to resist. The bakery exudes charm with its cozy ambiance, making it an ideal spot to savor a treat. If you're a cookie lover, Schubert's is a must-visit! 🍪✨

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Hot Cookie

Stepping into Hot Cookie was like entering a sweet wonderland! The intoxicating aroma of freshly baked goods danced through the air, and I couldn’t resist their signature Chocolate Chip Cookie. It was perfectly chewy, with a blissful melt-in-your-mouth chocolate experience. Each bite was a delightful balance of warm and gooey goodness. The playful atmosphere, adorned with cheeky cookie-themed art, only added to my delight. For a sweet treat that embraces both indulgence and fun, Hot Cookie is a must-visit spot in San Francisco. Their cookies truly capture the essence of what makes this city’s culinary scene so remarkable! 🍪✨

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Anthony's Cookies

Stepping into Anthony's Cookies feels like entering a sweet haven! The aroma of baking cookies wafts through the air, instantly inviting. I indulged in their signature Chocolate Chip, which boasts a perfectly crispy exterior and a gooey, molten center that’s pure bliss. The delightful bite of sea salt elevates each mouthful, offering a decadent balance. I was also enchanted by the Snickerdoodle, with its cinnamon sugar coating, creating a delightful crunch! With every taste, I felt like a kid in a cookie shop. If you're in search of cookie perfection, look no further than Anthony's! 🍪✨

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LOQUAT

Hidden in the heart of San Francisco, LOQUAT is a delightful treasure for cookie lovers! Their chocolate chip cookie is a must-try, perfectly baked with a crisp edge and a gooey center that melts in your mouth. I couldn't resist the floral notes from their signature lavender-lemon cookie — a refreshing twist that'll transport your taste buds to a sunny garden. The atmosphere is cozy, inviting you to linger longer over your sweet discoveries. If you're on a quest for the best cookies in the city, LOQUAT should definitely be on your list! 🍪✨

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b. patisserie

At b. patisserie, the cookies are nothing short of culinary masterpieces. The moment I took a bite of their signature Chocolate Chip Cookie, I was transported to cookie heaven. It's the perfect balance of chewy and crispy, with chocolate chunks that melt gracefully in your mouth. The hint of sea salt elevates the flavor, making each bite an indulgent experience. Not to be overlooked, their Oatmeal Raisin cookie surprises with a buttery richness that’s hard to resist. If you're hunting for a true cookie gem in San Francisco, b. patisserie should undoubtedly top your list!

Stella Pastry

Stella Pastry is a delightful gem nestled in North Beach, where tradition dances in every bite! Their classic Italian cookies are a true testament to craftsmanship, with each cookie bursting with flavor. I savored the pignoli, a heavenly almond delight, featuring a perfect balance of crunchy and chewy textures that left me craving more. The atmosphere is charming, with a welcoming vibe that makes you want to linger over your treats. If you're in search of a cookie experience that whispers of nostalgia and authenticity, Stella Pastry is an absolute must-visit for any cookie enthusiast!